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Journal Articles

Site-specific relaxation of peptide bond planarity induced by electrically attracted proton/deuteron observed by neutron crystallography

Chiba, Kaori*; Matsui, Takuro*; Chatake, Toshiyuki*; Ohara, Takashi; Tanaka, Ichiro*; Yutani, Katsuhide*; Niimura, Nobuo*

Protein Science, 32(10), p.e4765_1 - e4765_13, 2023/10

 Times Cited Count:0 Percentile:0(Biochemistry & Molecular Biology)

Journal Articles

Effects of salt concentration on association of the amyloid protofilaments of hen egg white lysozyme studied by time-resolved neutron scattering

Fujiwara, Satoru; Matsumoto, Fumiko*; Yonezawa, Yasushige*

Journal of Molecular Biology, 331(1), p.21 - 28, 2003/08

 Times Cited Count:45 Percentile:59.1(Biochemistry & Molecular Biology)

The kinetic process of the fibril formation of hen egg white lysozyme (HEWL) in 90% ethanol in various salt concentrations has been investigated with time-resolved neutron scattering. It was shown that by addition of NaCl in a range between 0.3 mM and 1.0 mM, gelation occurred, and this gelation proceed through a two-step process; the lateral association of the protofilaments formed by HEWL, followed by the cross-linking of these fibrils formed. Both the structures of the fibrils and the rate of the gelation depended on NaCl concentration. Above 2 mM NaCl, precipitation occurred because of the formation of amorphous aggregates. Sensitivity of the aggregated structures to salt concentration suggests that electrostatic interaction plays an essential role in the formation of these structures. The structural diversity both in the fibrils and the aggregated structures of the fibrils can be interpreted in terms of the difference in the degree of the electrostatic shielding at different salt concentrations.

Journal Articles

An Insight into the pathway of the amyloid fibril formation of hen egg white lysozyme obtained from a small-angle X-ray and neutron scattering study

Yonezawa, Yasushige*; Tanaka, Shimpei*; Kubota, Tomomi*; Wakabayashi, Katsuzo*; Yutani, Katsuhide*; Fujiwara, Satoru

Journal of Molecular Biology, 323(2), p.237 - 251, 2002/10

 Times Cited Count:76 Percentile:74.78(Biochemistry & Molecular Biology)

It is known that hen egg white lysozyme (HEWL) forms amyloid fibrils in highly concentrated ethanol solutions. In order to gain an insight into the mechanism of the amyloid fibril formation, the structures of HEWL in solutions of various protein and ethanol concentrations were investigated with small-angle X-ray and neutron scattering. It was shown that the structural states of HEWL were distinguished as the monomer state, the state of the dimer formation, the state of the protofilament formation, the protofilament state, and the state towards the formation of the amyloid fibrils. Circular dichroism measurements showed that the large changes in the secondary structures of HEWL occurred during the dimer formation. Structural characterization showed that the dimers had an elongated shape, the protofilaments were formed by stacking of the dimers with their long axis (nearly) perpendicular to the protofilament axis, and the changes of the structural states towards the amyloid fibril formation occurred via lateral association of the protofilaments.

Journal Articles

Neutron crystallography of hen egg-white lysozyme at pH4.9

Maeda, Mitsuru; Fujiwara, Satoru; Yonezawa, Yasushige*; Niimura, Nobuo

Journal of the Physical Society of Japan, Vol.70, Supplement A, p.403 - 405, 2001/05

no abstracts in English

Journal Articles

Measurement and control of the crystal growth rate of tetragonal hen egg-white lysozyme imaged with an atomic force microscope

Rong, L.*; Yamane, T.*; Niimura, Nobuo

Journal of Crystal Growth, 217(1-2), p.161 - 169, 2000/07

 Times Cited Count:27 Percentile:84.43(Crystallography)

no abstracts in English

Journal Articles

Polar structure of lysozyme aggregates in unsaturated solution determined by small-angle neutron scattering-contrast variation method

Niimura, Nobuo; Minezaki, Yoshiaki; *; Fujiwara, Satoru; *

Journal of Crystal Growth, 200, p.265 - 270, 1999/00

 Times Cited Count:14 Percentile:70.47(Crystallography)

no abstracts in English

Journal Articles

Structural study of HEW-lysozyme by neutron crystallography

Minezaki, Yoshiaki; *; Niimura, Nobuo

Journal of Physics and Chemistry of Solids, 60(8-9), p.1387 - 1391, 1999/00

 Times Cited Count:2 Percentile:17.06(Chemistry, Multidisciplinary)

no abstracts in English

Journal Articles

Dissolution rate of hen egg-white lysozyme crystal under microgravity

Niimura, Nobuo; *; *

J. Jpn. Soc. Microgravity Appl., 15(SUPPL.2), p.582 - 584, 1998/00

no abstracts in English

Journal Articles

Hydrogen and hydration of protein

Niimura, Nobuo*; Minezaki, Yoshiaki

Nihon Kessho Gakkai-Shi, 40(1), p.114 - 118, 1998/00

no abstracts in English

Journal Articles

Lysozyme function observed by neutron diffraction method

Niimura, Nobuo

Seibutsu Butsuri, 38(4), p.167 - 169, 1998/00

no abstracts in English

Journal Articles

Neutron laue diffractometry with an imaging plate provides an effective data collection regime for neutron protein crystallography

Niimura, Nobuo; Minezaki, Yoshiaki; *; J.C.Castagna*; F.Cipriani*; P.Hoghoj*; M.S.Lehmann*; C.Wilkinson*

Nature Structural Biology, 4(11), p.909 - 914, 1997/11

 Times Cited Count:143 Percentile:94.91(Biochemistry & Molecular Biology)

no abstracts in English

Journal Articles

Water and hydrogen in bio-macromolecules (neutron crystallography in biology)

Niimura, Nobuo*

Baiosaiensu To Indasutori, 54(6), p.405 - 406, 1996/00

no abstracts in English

Journal Articles

Small angle neutron scattering from lysozyme solutions in unsaturated and supersaturated states (SANS from lysozyme solutions)

Minezaki, Yoshiaki; Niimura, Nobuo*; *; *

Biophysical Chemistry, 58, p.355 - 363, 1996/00

 Times Cited Count:27 Percentile:66.44(Biochemistry & Molecular Biology)

no abstracts in English

Journal Articles

Aggregation in supersaturated lysozyme solution studied by time-resolved small angle neutron scattering

Niimura, Nobuo*; Minezaki, Yoshiaki; *; *

Journal of Crystal Growth, 154, p.136 - 144, 1995/00

 Times Cited Count:73 Percentile:97.57(Crystallography)

no abstracts in English

Journal Articles

Small-angle neutron scattering from lysozyme crystallization process

Niimura, Nobuo*; *; Minezaki, Yoshiaki; *

Physica B; Condensed Matter, 213-214, p.745 - 747, 1995/00

 Times Cited Count:7 Percentile:45.21(Physics, Condensed Matter)

no abstracts in English

Journal Articles

Diffractometer for neutron crystallography in biology

Niimura, Nobuo*; *; Minezaki, Yoshiaki; *; *; *; *; Hidaka, M.*; Minakawa, Nobuaki; Morii, Yukio

Physica B; Condensed Matter, 213-214, p.786 - 789, 1995/00

 Times Cited Count:18 Percentile:70.91(Physics, Condensed Matter)

no abstracts in English

Journal Articles

Small angle neutron scattering from lysozyme in unsaturated solutions, to characterize the pre-crystallization process

Niimura, Nobuo*; Minezaki, Yoshiaki; *; *

Journal of Crystal Growth, 137, p.671 - 675, 1994/00

 Times Cited Count:32 Percentile:94.23(Crystallography)

no abstracts in English

Journal Articles

Structure study of biological macromolecule

Niimura, Nobuo*

Nihon Kessho Gakkai-Shi, 36, p.157 - 161, 1994/00

no abstracts in English

Journal Articles

Separation of human tear proteins with ceramic hydroxyapatite high-performance liquid chromatography

*; Yoshida, Masaru; *; Omichi, Hideki; *

Journal of Chromatography, 620, p.149 - 152, 1993/00

no abstracts in English

19 (Records 1-19 displayed on this page)
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